[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: pintilie & gd)

EMDB-41637:
Asymmetric cryoEM reconstruction of Mayaro virus
Method: single particle / : Chmielewski D, Kaelber J, Jin J, Weaver S, Auguste AJ, Chiu W

EMDB-28979:
Cryo-EM structure of Chikungunya virus asymmetric unit
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41096:
Cryo-electron tomography of Chikungunya virus pentamer structure
Method: subtomogram averaging / : Chmielewsk D, Su GC, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41631:
Cryo-EM structure of Chikungunya virus with asymmetric reconstruction
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-28138:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28141:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28142:
3D Reconstruction of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-41126:
Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain with bound inhibitor AK-42
Method: single particle / : Xu M, Neelands T, Powers AS, Liu Y, Miller S, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M

EMDB-41127:
Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain Apo state with resolved N-terminal hairpin
Method: single particle / : Xu M, Neelands T, Powers AS, Liu Y, Miller S, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M

EMDB-41128:
Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain with symmetric C-terminal
Method: single particle / : Xu M, Neelands T, Powers AS, Liu Y, Miller S, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M

EMDB-41129:
Title: Cryo-EM structure of the human CLC-2 chloride channel transmembrane domain with asymmetric C-terminal
Method: single particle / : Xu M, Neelands T, Powers AS, Liu Y, Miller S, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M

EMDB-41130:
Cryo-EM structure of the human CLC-2 chloride channel C-terminal domain
Method: single particle / : Xu M, Neelands T, Powers AS, Liu Y, Miller S, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M

EMDB-28125:
Plasmodium falciparum merozoites apical 2-ring units
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-28126:
Toxoplasma apical rings
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-26018:
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M

EMDB-26019:
Subpellicular microtubule from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

EMDB-26020:
The tubulin-based conoid from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

EMDB-25791:
cryo-EM structure of MBP-KIX-apoferritin
Method: single particle / : Zhang K, Horikoshi N, Li S, Powers A, Hameedi M, Pintilie G, Chae H, Khan Y, Suomivuori C, Dror R, Sakamoto K, Chiu W, Wakatsuki S

EMDB-25799:
cryo-EM structure of MBP-KIX-apoferritin complex with peptide 7
Method: single particle / : Zhang K, Horikoshi N, Li S, Powers A, Hameedi M, Pintilie G, Chae H, Khan Y, Suomivuori C, Dror R, Sakamoto K, Chiu W, Wakatsuki S

EMDB-26010:
The symmetrized subpellicular microtubule map from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-26006:
3D reconstruction of detergent-extract Toxoplasma gondii cells at the apical end
Method: electron tomography / : Sun SY, Segev-Zarko L

EMDB-26007:
Three-dimensional organization of the apical complex in Toxoplasma tachyzoites
Method: electron tomography / : Sun SY, Segev-Zarko L

EMDB-26008:
In situ average map of conoid with PCR from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-26009:
The conoid segment from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-23710:
6-Deoxyerythronolide B synthase (DEBS) hybrid module (M3/1) in complex with antibody fragment 1B2
Method: single particle / : Cogan DP, Zhang K, Chiu W, Khosla C

EMDB-23711:
6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: State 1
Method: single particle / : Cogan DP, Zhang K, Chiu W, Khosla C

EMDB-23712:
6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: State 2
Method: single particle / : Cogan DP, Zhang K, Chiu W, Khosla C

EMDB-23713:
6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: State 1'
Method: single particle / : Cogan DP, Zhang K, Chiu W, Khosla C

EMDB-23714:
6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2 (TE-free)
Method: single particle / : Cogan DP, Zhang K

EMDB-23715:
6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: "turnstile closed" state (TE-free)
Method: single particle / : Cogan DP, Zhang K, Chiu W, Khosla C

EMDB-31534:
A complete three-dimensional structure of the Lon protease translocating a protein substrate (conformation 1)
Method: single particle / : Li S, Hsieh K, Kuo C, Lee S, Pintilie G, Zhang K, Chang C

EMDB-31535:
A complete three-dimensional structure of the Lon protease translocating a protein substrate (conformation 2)
Method: single particle / : Li S, Hsieh K, Kuo C, Lee S, Pintilie G, Zhang K, Chang C

EMDB-31385:
Apo L-21 ScaI Tetrahymena ribozyme
Method: single particle / : Su Z, Zhang K, Kappel K, Luo B, Das R, Chiu W

EMDB-31386:
Holo L-16 ScaI Tetrahymena ribozyme
Method: single particle / : Su Z, Zhang K, Kappel K, Luo B, Das R, Chiu W

EMDB-24665:
Apoferritin structure at 1.27 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Method: single particle / : Pintilie G, Zhang K, Chiu W

EMDB-21870:
Molecular basis for the ATPase-powered substrate translocation by the Lon AAA+ protease
Method: single particle / : Zhang K, Li S, Hsiehb K, Sub S, Pintilie G, Chiu W, Chang C

EMDB-22519:
The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion
Method: single particle / : Oliver SL

EMDB-22520:
The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion
Method: single particle / : Oliver SL

EMDB-22629:
The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion.
Method: single particle / : Oliver SL

EMDB-22657:
Apoferritin structure at 1.34 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with K3 detector
Method: single particle / : Zhang K, Pintilie G

EMDB-22658:
Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Method: single particle / : Zhang K, Pintilie G

EMDB-22296:
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Method: single particle / : Zhang K, Zheludev I

EMDB-22297:
Nanostructure of Frameshift Stimulation Element Tagged by ATP-TTR3
Method: single particle / : Zhang K, Zheludev I, Hagey R, Wu M, Haslecker R, Hou Y, Kretsch R, Pintilie G, Rangan R, Kladwang W, Li S, Pham E, Souibgui C, Baric R, Sheahan T, Souza V, Glenn J, Chiu W, Das R

EMDB-22384:
Full-length three-dimensional structure of the influenza A virus M1 protein and its organization into a matrix layer
Method: helical / : Su Z, Pintilie G

EMDB-21247:
A 2.8 Angstrom Cryo-EM Structure of a Glycoprotein B-Neutralizing Antibody Complex Reveals a Critical Domain for Herpesvirus Fusion Initiation
Method: single particle / : Oliver SL

EMDB-21358:
Type I-F CRISPR-Csy complex with its inhibitor AcrF9
Method: single particle / : Zhang K, Li S

EMDB-21359:
Type I-F CRISPR-Csy complex with its inhibitor AcrF8
Method: single particle / : Zhang K, Li S

EMDB-21360:
Type I-F CRISPR-Csy complex with its inhibitor AcrF6
Method: single particle / : Zhang K, Li S

EMDB-20416:
Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly
Method: single particle / : Li S, Su Z

EMDB-0542:
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1)
Method: single particle / : Zhang K, Zhang H, Li S, Au S, Chiu W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more